docs: Document important parts of the code

src/main/kotlin/app/revanced/patcher/Patcher.kt

@@ -5,17 +5,24 @@ import app.revanced.patcher.patch.Patch
 import app.revanced.patcher.resolver.SignatureResolver
 import app.revanced.patcher.signature.MethodSignature
 import lanchon.multidexlib2.BasicDexFileNamer
+import lanchon.multidexlib2.DexIO
 import lanchon.multidexlib2.MultiDexIO
 import org.jf.dexlib2.Opcodes
 import org.jf.dexlib2.iface.ClassDef
 import org.jf.dexlib2.iface.DexFile
 import java.io.File
 
+/**
+ * ReVanced Patcher.
+ * @param input The input file (an apk or any other multi dex container).
+ * @param output The output folder.
+ * @param signatures An array of method signatures for the patches
+ *
+ */
 class Patcher(
     input: File,
     private val output: File,
     signatures: Array<MethodSignature>,
-
     ) {
     private val cache: Cache
     private val patches = mutableSetOf<Patch>()
@@ -25,6 +32,9 @@ class Patcher(
         cache = Cache(dexFile.classes, SignatureResolver(dexFile.classes, signatures).resolve())
     }
 
+    /**
+     * Save the patched dex file.
+     */
     fun save() {
         val newDexFile = object : DexFile {
             override fun getClasses(): Set<ClassDef> {
@@ -45,13 +55,21 @@ class Patcher(
         }
 
         // TODO: we should use the multithreading capable overload for writeDexFile
-        MultiDexIO.writeDexFile(true, output, BasicDexFileNamer(), newDexFile, 50000, null)
+        MultiDexIO.writeDexFile(true, output, BasicDexFileNamer(), newDexFile, DexIO.DEFAULT_MAX_DEX_POOL_SIZE, null)
     }
 
+    /**
+     * Add a patch to the patcher.
+     * @param patches The patches to add.
+     */
     fun addPatches(vararg patches: Patch) {
         this.patches.addAll(patches)
     }
 
+    /**
+     * Apply patches loaded into the patcher.
+     * @param stopOnError If true, the patches will stop on the first error.
+     */
     fun applyPatches(stopOnError: Boolean = false): Map<String, Result<Nothing?>> {
         return buildMap {
             // TODO: after each patch execution we could clear left overs like proxied classes to safe memory

src/main/kotlin/app/revanced/patcher/cache/Cache.kt

@@ -13,6 +13,10 @@ class Cache(
     //  if the class proxy already exists in the cached proxy list below
     internal val classProxy = mutableSetOf<ClassProxy>()
 
+    /**
+     * Find a class by a given predicate
+     * @return A proxy for the first class that matches the predicate
+     */
     fun findClass(predicate: (ClassDef) -> Boolean): ClassProxy? {
         // if we already proxied the class matching the predicate,
         val proxiedClass = classProxy.singleOrNull { classProxy -> predicate(classProxy.immutableClass) }

src/main/kotlin/app/revanced/patcher/proxy/ClassProxy.kt

@@ -3,6 +3,13 @@ package app.revanced.patcher.proxy
 import app.revanced.patcher.proxy.mutableTypes.MutableClass
 import org.jf.dexlib2.iface.ClassDef
 
+/**
+ * A proxy class for a [ClassDef]
+ * A class proxy simply holds a reference to the original class
+ * and creates a mutable clone for the original class if needed.
+ * @param immutableClass The class to proxy
+ * @param originalIndex The original index of the class in the list of classes
+ */
 class ClassProxy(
     val immutableClass: ClassDef,
     val originalIndex: Int,
@@ -10,6 +17,10 @@ class ClassProxy(
     internal var proxyUsed = false
     internal lateinit var mutatedClass: MutableClass
 
+    /**
+     * Creates and returns a mutable clone of the original class
+     * A patch should always use the original immutable class reference to avoid unnucessary allocations for the mutable class
+     */
     fun resolve(): MutableClass {
         if (!proxyUsed) {
             proxyUsed = true

src/main/kotlin/app/revanced/patcher/signature/MethodSignature.kt

@@ -2,6 +2,14 @@ package app.revanced.patcher.signature
 
 import org.jf.dexlib2.Opcode
 
+/**
+ * Represents a method signature.
+ * @param name A suggestive name for the method which the signature was created for.
+ * @param returnType The return type of the method.
+ * @param methodParameters The parameters of the method.
+ * @param opcodes A list of opcodes of the method.
+ * @param accessFlags The access flags of the method.
+ */
 @Suppress("ArrayInDataClass")
 data class MethodSignature(
     val name: String,

src/main/kotlin/app/revanced/patcher/signature/SignatureResolverResult.kt

@@ -3,6 +3,12 @@ package app.revanced.patcher.signature
 import app.revanced.patcher.proxy.ClassProxy
 import app.revanced.patcher.resolver.SignatureResolver
 
+/**
+ * Represents the result of a [SignatureResolver].
+ * @param definingClassProxy The [ClassProxy] that the matching method was found in.
+ * @param resolvedMethodName The name of the actual matching method.
+ * @param scanData OpCodes pattern scan result.
+ */
 data class SignatureResolverResult(
     val definingClassProxy: ClassProxy,
     val resolvedMethodName: String,