fix: bring back Flathub manifest improvements to the repo

- Brings back all manifest improvements, such as the incredibly important Mojang Java Downloader (without it, the Flatpak doesn't work), and important fixes for Wayland.

Signed-off-by: Arcitec <38923130+Arcitec@users.noreply.github.com>

flatpak/patches/0003-Don-t-crash-on-calls-to-focus-or-icon.patch

@@ -1,24 +0,0 @@
-diff --git a/src/wl_window.c b/src/wl_window.c
-index 52d3b9eb..4ac4eb5d 100644
---- a/src/wl_window.c
-+++ b/src/wl_window.c
-@@ -2117,8 +2117,7 @@ void _glfwSetWindowTitleWayland(_GLFWwindow* window, const char* title)
- void _glfwSetWindowIconWayland(_GLFWwindow* window,
-                                int count, const GLFWimage* images)
- {
--    _glfwInputError(GLFW_FEATURE_UNAVAILABLE,
--                    "Wayland: The platform does not support setting the window icon");
-+    fprintf(stderr, "!!! Ignoring Error: Wayland: The platform does not support setting the window icon\n");
- }
- 
- void _glfwGetWindowPosWayland(_GLFWwindow* window, int* xpos, int* ypos)
-@@ -2361,8 +2360,7 @@ void _glfwRequestWindowAttentionWayland(_GLFWwindow* window)
- 
- void _glfwFocusWindowWayland(_GLFWwindow* window)
- {
--    _glfwInputError(GLFW_FEATURE_UNAVAILABLE,
--                    "Wayland: The platform does not support setting the input focus");
-+    fprintf(stderr, "!!! Ignoring Error: Wayland: The platform does not support setting the input focus\n");
- }
- 
- void _glfwSetWindowMonitorWayland(_GLFWwindow* window,

flatpak/patches/0005-Add-warning-about-being-an-unofficial-patch.patch

@@ -1,17 +0,0 @@
-diff --git a/src/init.c b/src/init.c
-index 06dbb3f2..a7c6da86 100644
---- a/src/init.c
-+++ b/src/init.c
-@@ -449,6 +449,12 @@ GLFWAPI int glfwInit(void)
-     _glfw.initialized = GLFW_TRUE;
- 
-     glfwDefaultWindowHints();
-+
-+    fprintf(stderr, "!!! Patched GLFW from https://github.com/Admicos/minecraft-wayland\n"
-+         "!!! If any issues with the window, or some issues with rendering, occur, "
-+         "first try with the built-in GLFW, and if that solves the issue, report there first.\n"
-+         "!!! Use outside Minecraft is untested, and things might break.\n");
-+
-     return GLFW_TRUE;
- }
- 

flatpak/patches/0007-Platform-Prefer-Wayland-over-X11.patch

@@ -1,20 +0,0 @@
-diff --git a/src/platform.c b/src/platform.c
-index c5966ae7..3e7442f9 100644
---- a/src/platform.c
-+++ b/src/platform.c
-@@ -49,12 +49,12 @@ static const struct
- #if defined(_GLFW_COCOA)
-     { GLFW_PLATFORM_COCOA, _glfwConnectCocoa },
- #endif
--#if defined(_GLFW_X11)
--    { GLFW_PLATFORM_X11, _glfwConnectX11 },
--#endif
- #if defined(_GLFW_WAYLAND)
-     { GLFW_PLATFORM_WAYLAND, _glfwConnectWayland },
- #endif
-+#if defined(_GLFW_X11)
-+    { GLFW_PLATFORM_X11, _glfwConnectX11 },
-+#endif
- };
- 
- GLFWbool _glfwSelectPlatform(int desiredID, _GLFWplatform* platform)

flatpak/patches/0009-Defer-setting-cursor-position-until-the-cursor-is-lo.patch

@@ -0,0 +1,59 @@
+From 9997ae55a47de469ea26f8437c30b51483abda5f Mon Sep 17 00:00:00 2001
+From: Dan Klishch <danilklishch@gmail.com>
+Date: Sat, 30 Sep 2023 23:38:05 -0400
+Subject: Defer setting cursor position until the cursor is locked
+
+---
+ src/wl_platform.h |  3 +++
+ src/wl_window.c   | 14 ++++++++++++--
+ 2 files changed, 15 insertions(+), 2 deletions(-)
+
+diff --git a/src/wl_platform.h b/src/wl_platform.h
+index ca34f66e..cd1f227f 100644
+--- a/src/wl_platform.h
++++ b/src/wl_platform.h
+@@ -403,6 +403,9 @@ typedef struct _GLFWwindowWayland
+     int                         scaleSize;
+     int                         compositorPreferredScale;
+ 
++    double                      askedCursorPosX, askedCursorPosY;
++    GLFWbool                    didAskForSetCursorPos;
++
+     struct zwp_relative_pointer_v1* relativePointer;
+     struct zwp_locked_pointer_v1*   lockedPointer;
+     struct zwp_confined_pointer_v1* confinedPointer;
+diff --git a/src/wl_window.c b/src/wl_window.c
+index 1de26558..0df16747 100644
+--- a/src/wl_window.c
++++ b/src/wl_window.c
+@@ -2586,8 +2586,9 @@ void _glfwGetCursorPosWayland(_GLFWwindow* window, double* xpos, double* ypos)
+ 
+ void _glfwSetCursorPosWayland(_GLFWwindow* window, double x, double y)
+ {
+-    _glfwInputError(GLFW_FEATURE_UNAVAILABLE,
+-                    "Wayland: The platform does not support setting the cursor position");
++    window->wl.didAskForSetCursorPos = true;
++    window->wl.askedCursorPosX = x;
++    window->wl.askedCursorPosY = y;
+ }
+ 
+ void _glfwSetCursorModeWayland(_GLFWwindow* window, int mode)
+@@ -2819,6 +2820,15 @@ static const struct zwp_relative_pointer_v1_listener relativePointerListener =
+ static void lockedPointerHandleLocked(void* userData,
+                                       struct zwp_locked_pointer_v1* lockedPointer)
+ {
++    _GLFWwindow* window = userData;
++
++    if (window->wl.didAskForSetCursorPos)
++    {
++        window->wl.didAskForSetCursorPos = false;
++        zwp_locked_pointer_v1_set_cursor_position_hint(window->wl.lockedPointer,
++                                                       wl_fixed_from_double(window->wl.askedCursorPosX),
++                                                       wl_fixed_from_double(window->wl.askedCursorPosY));
++    }
+ }
+ 
+ static void lockedPointerHandleUnlocked(void* userData,
+-- 
+2.42.0
+

flatpak/patches/weird_libdecor.patch

@@ -1,40 +0,0 @@
-diff --git a/src/libdecor.c b/src/libdecor.c
-index a9c1106..1aa38b3 100644
---- a/src/libdecor.c
-+++ b/src/libdecor.c
-@@ -1391,22 +1391,32 @@ calculate_priority(const struct libdecor_plugin_description *plugin_description)
- static bool
- check_symbol_conflicts(const struct libdecor_plugin_description *plugin_description)
- {
-+	bool ret = true;
- 	char * const *symbol;
-+	void* main_prog = dlopen(NULL, RTLD_LAZY);
-+	if (!main_prog) {
-+		fprintf(stderr, "Plugin \"%s\" couldn't check conflicting symbols: \"%s\".\n",
-+					plugin_description->description, dlerror());
-+		return false;
-+	}
-+
- 
- 	symbol = plugin_description->conflicting_symbols;
- 	while (*symbol) {
- 		dlerror();
--		dlsym (RTLD_DEFAULT, *symbol);
-+		dlsym (main_prog, *symbol);
- 		if (!dlerror()) {
- 			fprintf(stderr, "Plugin \"%s\" uses conflicting symbol \"%s\".\n",
- 					plugin_description->description, *symbol);
--			return false;
-+			ret = false;
-+			break;
- 		}
- 
- 		symbol++;
- 	}
- 
--	return true;
-+	dlclose(main_prog);
-+	return ret;
- }
- 
- static struct plugin_loader *